Mount Elgon’s forests are rich in birds, with a total of 300 species. The park harbours 43 of the 144 species of the Guinea–Congo Forests biome and 56 of the 88 species of Afro-tropical Highland biome that occur in Uganda. There are isolated records of the near-threatened species, the Taita Falcon. Mount Elgon represents the western range limit of some species or races that occur in the highlands of Kenya and northern Tanzania, such as Hunter’s Cisticola and Jackson Francolin.

Notable of the species restricted to the Afro-tropical Highlands biome; the Moorland Francolin, Moustached Green Tinker bird, and the Alpine Chat. There is also an endemic race of the White-starred Robin. Others to look out for include; Cape Robin-Chat, Blue-shouldered Robin-Chat, Little Rock-Thrush, Northern Anteater Chat, Nightingale, Spotted Morning-Thrush, Mountain Yellow Warbler, African Reed Warbler, Little Rush Warbler, Upcher’s Warbler, Blackcap, Common Whitethroat, Common Chiffchaff, the Uganda and Brown Woodland Warblers, Green Hylia, White-browed Crombec, Yellow-bellied Hyliota, the Stout, Thrilling, and Rattling Cisticola. Chances of seeing the Banded Prinia, Chestnut-throated Apalis, Northern Double-collared Sunbird, Grey-headed Sunbird, Yellow-billed Shrike, Ludher’s Bush-shrike, Cape Rock, Fan-tailed and White-napped Raven, Chestnut Sparrow, Chestnut-crowned Sparrow-Weaver, White-headed Buffalo-Weaver and many more are very high.